Zhijin Wu PhD

My google scholar page is more up to date and complete than the list below.


Li N, McCall MN, & Wu, Z. (2016). Establishing Informative Prior for Gene Expression Variance from Public Databases. Statistics in Biosciences.

Wu H, Chi Wang and Wu Z (2015) PROPER: comprehensive power evaluation for differential expression using RNA‐seq. Bioinformatics 31 (2): 233‐241. (Package PROPER )

CW Dunn, X Luo, Z Wu (2013) Phylogenetic analysis of gene expression. Integrative and comparative biology 53 (5), 847‐856

A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data.  Hao Wu, Chi Wang and Zhijin Wu (2012) Biostatistics Open Access Fulltext doi:10.1093/biostatistics/kxs033 (Package: DSS )

Removing technical variability in RNA-seq data using conditional quantile normalization Kasper D. Hansen; Rafael A. Irizarry; Zhijin Wu (2012) Biostatistics 2012; doi: 10.1093/biostatistics/kxr054 ( Tech Report )

Aryee, M, Wu Z, Ladd-Acosta C, Herb B, Feinberg Ap, Yegnasubramanian S And Irizarry R. Accurate genome-scale percentage DNA methylation estimates from microarray data (2011). Biostatistics 12(2):197

Wu Z, Jenkins BD, Rynears TA and others (2010). Empirical Bayes Analysis of Sequencing-based Transcriptional Profiling without Replicates. BMC Bioinformatics. 11:564 Fulltext

Wu Z and Aryee M. Subset Quantile Normalization using Negative Control Features (2010) Journal of Computational Biology, 17(10)

Wu Z A review of statistical methods for preprocessing oligonucleotide microarrays (2009). Statistical Methods in Medical Research, 18 (6), 533-541

Sui, Y., Zhao, X., Speed, T.P. and Wu, Z. Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments (2009) Journal of Computational Biology. 16(11): 1501--1515

Wu Z, Liu D and Sui Y (2008). Quantitative Assessment of Hit Detection and Confirmation in Single and Duplicate HTS Screenings. Journal of Biomolecular Screening. 13(2):159-167

Sui Y and Wu Z (2007) , Alternative Statistical Parameter for High-Throughput Screening Assay Quality Assessment, Journal of Biomolecular Screening 2007:229-234.

Irizarry RA, Cope L, Wu Z (2006) Feature-level exploration of the Choe et al. Affymetrix GeneChip control dataset. Genome Biology, 2006, 7:404

Irizarry, RA, Wu, Z and Jaffee, H (2006) Comparison of Affymetrix GeneChip Expression Measures. Bioinformatics 22(7):789-794 [web page]

Wu, Z and Irizarry, RA (2005) A Statistical Framework for the Analysis of Microarray Probe-Level Data [web page]

Wu, Z, Irizarry, RA, Gentleman, R, Martinez Murillo, F, Spencer, F (2004) A Model Based Background Adjustement for Oligonucleotide Expression Arrays. JASA 99(468) 909. [Full-text-PDF]

Get the R package from bioconductor.

Wu, Z, Irizarry, RA (2004) Preprocessing of oligonucleotide array data Nature Biotechnology 22: 656 - 658 [Full-text]

Wu, Z and Irizarry, RA, Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays . Proceedings of RECOMB 2004 [Full-text-PDF].

Cope, LM, Irizarry , RA, Jaffee, H, Wu, Z, Speed, TP (2003) A Benchmark for Affymetrix GeneChip Expression Measures. Bioinformatics 20: 323-331. [Web-page Supplemental-material-PDF]

Irizarry, RA, Ooi, SL, Wu, Z, and Boeke, Jef (2003) Use of Mixture Models in a Microarray-Based Screening Procedure for Detecting Differentially Represented Yeast Mutants. Statistical Applications in Genetics and Molecular Biology. Vol. 2, Issue 1. [Web Page